Variant report

Variant	rs4532931
Chromosome Location	chr10:22837014-22837015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22836119..22838816-chr10:22841723..22844142,3	K562	blood:
2	chr10:22830647..22832751-chr10:22836166..22838265,2	K562	blood:
3	chr10:22745153..22747166-chr10:22836379..22838583,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10047326	0.92[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs10430590	0.88[CEU][hapmap]
rs1053454	0.92[CEU][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs10741006	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10828314	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10828315	0.92[CEU][hapmap]
rs10828316	0.88[CEU][hapmap]
rs10828317	0.88[CEU][hapmap]
rs11013045	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11013046	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013048	0.85[CEU][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs12146350	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs12241748	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1831000	0.80[AFR][1000 genomes]
rs3793752	0.80[EUR][1000 genomes]
rs4747442	0.92[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4747443	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4748810	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs4748811	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4748812	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4748813	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4748814	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748816	0.83[EUR][1000 genomes]
rs55867440	0.81[EUR][1000 genomes]
rs7075634	0.81[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs7081744	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7082618	0.90[EUR][1000 genomes]
rs7088318	0.81[ASW][hapmap];0.82[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.83[TSI][hapmap];0.83[AFR][1000 genomes]
rs7094131	0.84[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7097972	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs746203	0.89[CEU][hapmap];0.80[GIH][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs7898308	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7901152	0.89[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs7916922	0.80[AFR][1000 genomes]
rs8341	0.96[CEU][hapmap];0.84[GIH][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs943189	0.92[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs943190	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs9783154	0.88[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4532931	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
2	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
8	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
18	chr10:22825200-22840000	Strong transcription	Fetal Stomach	stomach
19	chr10:22825400-22838000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:22825400-22838000	Strong transcription	Fetal Intestine Small	intestine
21	chr10:22825600-22843800	Weak transcription	Stomach Mucosa	stomach
22	chr10:22825600-22888000	Weak transcription	HMEC	breast
23	chr10:22825800-22843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:22826000-22843400	Weak transcription	Fetal Brain Female	brain
25	chr10:22826200-22843600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:22826600-22843400	Weak transcription	Colonic Mucosa	Colon
27	chr10:22827000-22842200	Weak transcription	Right Atrium	heart
28	chr10:22828600-22837200	Weak transcription	NH-A	brain
29	chr10:22828800-22840200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr10:22828800-22841400	Weak transcription	HSMM	muscle
31	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:22830200-22839200	Strong transcription	Brain Substantia Nigra	brain
33	chr10:22830600-22840400	Weak transcription	Fetal Brain Male	brain
34	chr10:22830600-22841200	Weak transcription	Fetal Lung	lung
35	chr10:22830600-22842400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:22830600-22853000	Weak transcription	HUVEC	blood vessel
37	chr10:22830800-22837400	Weak transcription	Osteobl	bone
38	chr10:22830800-22839600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:22831000-22839000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:22831200-22842800	Weak transcription	Ovary	ovary
42	chr10:22831200-22843200	Weak transcription	NHLF	lung
43	chr10:22831200-22843600	Weak transcription	Esophagus	oesophagus
44	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:22831400-22839600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:22831600-22842800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr10:22831800-22837200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:22831800-22852600	Weak transcription	A549	lung
49	chr10:22832200-22838000	Strong transcription	Spleen	Spleen
50	chr10:22832200-22843600	Weak transcription	Pancreas	Pancrea

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