Variant report

Variant	rs9783154
Chromosome Location	chr10:22827411-22827412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10047326	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10430590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1053454	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10741006	0.86[CEU][hapmap]
rs10828314	0.93[CEU][hapmap]
rs10828315	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013045	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11013046	0.96[CEU][hapmap]
rs11013048	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013051	0.80[EUR][1000 genomes]
rs12146350	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12241748	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2296624	0.81[ASN][1000 genomes]
rs28666940	0.83[ASN][1000 genomes]
rs35549346	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3793752	0.82[ASN][1000 genomes]
rs4532931	0.88[CEU][hapmap]
rs4747442	0.96[CEU][hapmap]
rs4747443	0.81[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4748810	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4748811	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4748812	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4748813	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4748814	0.85[CEU][hapmap]
rs7075634	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7081744	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7082618	0.92[ASN][1000 genomes]
rs7088318	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7094131	0.81[CEU][hapmap]
rs7097972	0.85[CEU][hapmap]
rs746203	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7899156	0.82[ASN][1000 genomes]
rs7901152	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs8341	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs943189	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs943190	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9787624	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9783154	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
2	chr10:22819400-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:22820200-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:22820200-22828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:22820600-22830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:22820800-22828000	Weak transcription	HSMMtube	muscle
7	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
8	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
9	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr10:22822800-22832600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:22823200-22831200	Strong transcription	Fetal Thymus	thymus
15	chr10:22823400-22828800	Strong transcription	GM12878-XiMat	blood
16	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:22823600-22828200	Weak transcription	NHDF-Ad	bronchial
18	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:22824000-22830000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:22824000-22833800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
24	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:22824200-22830000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:22824200-22831600	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:22824200-22832000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:22824200-22833200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:22824200-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:22824400-22827800	Weak transcription	NH-A	brain
34	chr10:22824400-22828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr10:22824400-22836400	Weak transcription	NHEK	skin
36	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:22824600-22836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:22824800-22828800	Genic enhancers	Brain Hippocampus Middle	brain
39	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:22825000-22830000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:22825000-22830800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:22825000-22832400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:22825000-22832800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr10:22825000-22833200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:22825000-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
50	chr10:22825200-22829200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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