Variant report

Variant	rs7901152
Chromosome Location	chr10:22833153-22833154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:22832495-22834653	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:22833038-22833408	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr10:22832977-22833288	K562	blood:	n/a	n/a
4	POLR2A	chr10:22830019-22835143	K562	blood:	n/a	n/a
5	POLR2A	chr10:22832909-22833920	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:22826598..22829352-chr10:22831029..22834021,2	K562	blood:
2	chr10:22724055..22728117-chr10:22831126..22835240,4	MCF-7	breast:
3	chr10:22613415..22615572-chr10:22832908..22835407,2	K562	blood:

Variant related genes	Relation type
PIP4K2A	TF binding region
ENSG00000150867	Chromatin interaction
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10047326	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10159730	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10430590	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1053454	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10741006	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10828314	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10828315	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828316	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10828317	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs11013045	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs11013046	0.96[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs11013048	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12146350	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12241748	0.84[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296624	0.85[ASN][1000 genomes]
rs28666940	0.89[ASN][1000 genomes]
rs35549346	0.89[ASN][1000 genomes]
rs3793752	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4532931	0.89[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs4747442	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4747443	0.85[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4748810	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748811	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4748812	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748813	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748814	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs4748816	0.85[EUR][1000 genomes]
rs7075634	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7081744	0.84[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7082618	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088318	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7094131	0.81[CEU][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7097972	0.84[CEU][hapmap]
rs746203	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7898308	0.88[EUR][1000 genomes]
rs7899156	0.82[ASN][1000 genomes]
rs8341	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs943189	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs943190	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9783154	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9787624	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7901152	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22834200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
3	chr10:22822400-22833400	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr10:22822800-22833400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:22823000-22844600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:22823400-22845200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:22823600-22842200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:22823800-22833800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:22823800-22845200	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:22824000-22833800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:22824000-22844400	Strong transcription	Primary B cells from cord blood	blood
13	chr10:22824000-22844800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:22824000-22853000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:22824200-22833200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:22824200-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:22824200-22839000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:22824200-22840000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:22824400-22836400	Weak transcription	NHEK	skin
20	chr10:22824400-22845400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:22824600-22836200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:22824800-22840800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:22825000-22833200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:22825000-22833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:22825000-22840200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:22825000-22840600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:22825000-22852800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
29	chr10:22825200-22833200	Strong transcription	Fetal Muscle Leg	muscle
30	chr10:22825200-22833600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:22825200-22833600	Strong transcription	Thymus	Thymus
32	chr10:22825200-22835400	Strong transcription	Dnd41	blood
33	chr10:22825200-22840000	Strong transcription	Fetal Stomach	stomach
34	chr10:22825400-22836800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:22825400-22838000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:22825400-22838000	Strong transcription	Fetal Intestine Small	intestine
37	chr10:22825600-22843800	Weak transcription	Stomach Mucosa	stomach
38	chr10:22825600-22888000	Weak transcription	HMEC	breast
39	chr10:22825800-22833800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:22825800-22833800	Strong transcription	Placenta	Placenta
41	chr10:22825800-22843600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:22826000-22833200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr10:22826000-22833600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr10:22826000-22843400	Weak transcription	Fetal Brain Female	brain
45	chr10:22826200-22833400	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:22826200-22843600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:22826600-22833800	Strong transcription	Gastric	stomach
48	chr10:22826600-22836800	Strong transcription	Aorta	Aorta
49	chr10:22826600-22843400	Weak transcription	Colonic Mucosa	Colon
50	chr10:22827000-22835800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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