Variant report

Variant	rs10741006
Chromosome Location	chr10:22856019-22856020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047326	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10159730	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10430590	0.86[CEU][hapmap]
rs1053454	0.89[CEU][hapmap]
rs10828314	0.85[CEU][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10828315	0.82[CEU][hapmap]
rs10828316	0.85[CEU][hapmap]
rs10828317	0.85[CEU][hapmap]
rs11013045	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11013046	0.89[CEU][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11013048	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs11013051	0.87[ASN][1000 genomes]
rs11013053	1.00[CHB][hapmap]
rs11013069	0.88[CHB][hapmap]
rs12146350	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs12241748	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1539628	1.00[CHB][hapmap]
rs1750747	1.00[CHB][hapmap]
rs1750775	1.00[CHB][hapmap]
rs1830999	0.82[AFR][1000 genomes]
rs1831000	0.88[AFR][1000 genomes]
rs2154053	1.00[CHB][hapmap]
rs28666940	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3793752	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4532931	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4747442	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs4747443	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4748810	0.89[CEU][hapmap]
rs4748811	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4748812	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs4748813	0.92[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4748814	0.93[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4748816	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55867440	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7075634	0.92[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7081744	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7082618	0.84[EUR][1000 genomes]
rs7088318	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7094131	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs7097972	0.93[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs746203	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7901152	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7912551	0.84[AFR][1000 genomes]
rs7916922	0.88[AFR][1000 genomes]
rs7917185	0.83[AFR][1000 genomes]
rs8341	0.85[CEU][hapmap]
rs943189	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs943190	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9783154	0.86[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10741006	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
3	chr10:22825600-22888000	Weak transcription	HMEC	breast
4	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:22836800-22856200	Weak transcription	HepG2	liver
8	chr10:22839000-22859400	Strong transcription	Primary T cells from cord blood	blood
9	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
11	chr10:22844200-22861800	Weak transcription	HSMM	muscle
12	chr10:22844200-22862400	Weak transcription	Stomach Mucosa	stomach
13	chr10:22844200-22876200	Weak transcription	Ovary	ovary
14	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:22844400-22856400	Weak transcription	NHLF	lung
17	chr10:22844400-22860600	Weak transcription	Fetal Kidney	kidney
18	chr10:22846200-22857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:22847400-22862400	Strong transcription	Fetal Thymus	thymus
21	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:22848000-22859400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:22849600-22861000	Weak transcription	Fetal Lung	lung
24	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:22850000-22869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:22850400-22878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:22850400-22882000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:22850400-22882600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:22850600-22856400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:22850800-22862400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:22851000-22860000	Weak transcription	Fetal Brain Male	brain
32	chr10:22851000-22861400	Weak transcription	Brain Germinal Matrix	brain
33	chr10:22851600-22859400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:22851800-22857400	Strong transcription	Brain Anterior Caudate	brain
35	chr10:22851800-22874800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr10:22852600-22859200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr10:22852800-22856800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr10:22852800-22859600	Strong transcription	Fetal Stomach	stomach
39	chr10:22853000-22856800	Weak transcription	Fetal Heart	heart
40	chr10:22853200-22858200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:22853600-22856200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr10:22853600-22859200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:22853600-22861600	Weak transcription	A549	lung
44	chr10:22853600-22878600	Weak transcription	HUVEC	blood vessel
45	chr10:22853800-22876200	Weak transcription	Osteobl	bone
46	chr10:22854000-22856200	Weak transcription	Fetal Intestine Large	intestine
47	chr10:22854000-22869600	Weak transcription	Pancreas	Pancrea
48	chr10:22854000-22879000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:22854200-22856200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:22854200-22856200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links