Variant report

Variant	rs7917185
Chromosome Location	chr10:22819418-22819419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22817636..22822369-chr10:22822584..22826795,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1053454	0.88[ASN][1000 genomes]
rs10741006	0.83[AFR][1000 genomes]
rs10828314	0.88[AFR][1000 genomes]
rs11013045	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11013046	0.86[AFR][1000 genomes]
rs12241748	0.83[AFR][1000 genomes]
rs1536332	0.87[ASN][1000 genomes]
rs1830997	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830998	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830999	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831000	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364115	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2885993	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747440	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747443	0.85[AFR][1000 genomes]
rs4748808	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748812	0.81[AMR][1000 genomes]
rs4748813	0.85[AFR][1000 genomes]
rs4748814	0.86[AFR][1000 genomes]
rs7075634	0.84[AFR][1000 genomes]
rs7088318	0.87[AFR][1000 genomes]
rs7097972	0.85[AFR][1000 genomes]
rs746203	0.81[AMR][1000 genomes]
rs7899156	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911272	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912551	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8341	0.92[ASN][1000 genomes]
rs9787624	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7917185	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22816800-22823000	Weak transcription	Right Atrium	heart
2	chr10:22818400-22823400	Weak transcription	HepG2	liver
3	chr10:22819000-22819800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
5	chr10:22819200-22819600	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:22819200-22819800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:22819200-22820000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:22819400-22819600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
9	chr10:22819400-22819600	Enhancers	Brain Hippocampus Middle	brain
10	chr10:22819400-22822200	Weak transcription	Primary T cells from cord blood	blood
11	chr10:22819400-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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