Variant report

Variant	rs4747440
Chromosome Location	chr10:22805109-22805110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1830997	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1830998	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1830999	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1831000	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2364115	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2885993	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4747443	0.82[ASN][1000 genomes]
rs4748808	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4748810	0.81[ASN][1000 genomes]
rs746203	0.80[ASN][1000 genomes]
rs7911272	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7912551	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7916922	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7917185	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4747440	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22765800-22806600	Weak transcription	Right Atrium	heart
2	chr10:22803400-22805200	Weak transcription	Placenta	Placenta
3	chr10:22804400-22807200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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