Variant report

Variant	rs7916922
Chromosome Location	chr10:22819258-22819259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22817636..22822369-chr10:22822584..22826795,5	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10047326	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10430590	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs1053454	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10741006	0.88[AFR][1000 genomes]
rs10828314	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10828315	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10828316	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10828317	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs11013045	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11013046	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs11013048	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12146350	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12241748	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes]
rs1536332	0.87[ASN][1000 genomes]
rs1830997	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830998	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830999	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364115	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2885993	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4532931	0.80[AFR][1000 genomes]
rs4747440	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747443	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs4748808	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748810	0.95[JPT][hapmap]
rs4748811	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs4748812	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs4748813	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes]
rs4748814	0.92[AFR][1000 genomes]
rs7075634	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes]
rs7081744	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7088318	0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[AFR][1000 genomes]
rs7097972	0.91[AFR][1000 genomes]
rs746203	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs7899156	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7901152	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7911272	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912551	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917185	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8341	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs943189	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs943190	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs9783154	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9787624	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7916922	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22816800-22823000	Weak transcription	Right Atrium	heart
2	chr10:22818400-22823400	Weak transcription	HepG2	liver
3	chr10:22819000-22819800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
5	chr10:22819200-22819600	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:22819200-22819800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:22819200-22820000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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