Variant report

Variant	rs1830999
Chromosome Location	chr10:22818861-22818862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22817636..22822369-chr10:22822584..22826795,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1053454	0.88[ASN][1000 genomes]
rs10741006	0.82[AFR][1000 genomes]
rs10828314	0.87[AFR][1000 genomes]
rs11013045	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11013046	0.85[AFR][1000 genomes]
rs12241748	0.82[AFR][1000 genomes]
rs1536332	0.87[ASN][1000 genomes]
rs1830997	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1830998	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1831000	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364115	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2885993	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4747440	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747443	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4748808	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4748812	0.82[AMR][1000 genomes]
rs4748813	0.84[AFR][1000 genomes]
rs4748814	0.85[AFR][1000 genomes]
rs7075634	0.83[AFR][1000 genomes]
rs7088318	0.86[AFR][1000 genomes]
rs7097972	0.84[AFR][1000 genomes]
rs746203	0.82[AMR][1000 genomes]
rs7899156	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911272	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916922	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917185	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8341	0.92[ASN][1000 genomes]
rs9787624	0.87[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22816800-22823000	Weak transcription	Right Atrium	heart
2	chr10:22817000-22819200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:22818400-22823400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links