Variant report

Variant	rs4748808
Chromosome Location	chr10:22817524-22817525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1053454	0.88[ASN][1000 genomes]
rs11013045	0.86[ASN][1000 genomes]
rs1536332	0.91[ASN][1000 genomes]
rs1830997	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830998	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830999	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1831000	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2364115	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2885993	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4747440	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7899156	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7911272	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912551	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7916922	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7917185	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8341	0.90[ASN][1000 genomes]
rs9787624	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4748808	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22816800-22823000	Weak transcription	Right Atrium	heart
2	chr10:22817000-22819200	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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