Variant report

Variant	rs7899156
Chromosome Location	chr10:22822524-22822525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10047326	0.95[CHB][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap]
rs10430590	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1053454	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.93[ASN][1000 genomes]
rs10828315	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10828316	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10828317	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11013045	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11013046	0.91[GIH][hapmap]
rs11013048	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12146350	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12241748	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1830997	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1830998	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1830999	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1831000	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2364115	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2885993	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4747443	0.94[JPT][hapmap]
rs4748808	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4748810	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4748811	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4748812	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4748813	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7075634	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7081744	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7082618	0.82[ASN][1000 genomes]
rs7088318	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs746203	0.91[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7901152	0.95[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7911272	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7912551	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7916922	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7917185	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8341	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs943189	0.95[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs943190	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs9783154	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9787624	0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7899156	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22816800-22823000	Weak transcription	Right Atrium	heart
2	chr10:22818400-22823400	Weak transcription	HepG2	liver
3	chr10:22819000-22830000	Weak transcription	HUVEC	blood vessel
4	chr10:22819400-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:22819600-22825000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:22819600-22825200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:22819800-22822800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:22819800-22823200	Weak transcription	Fetal Thymus	thymus
9	chr10:22819800-22824000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:22819800-22825200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:22819800-22825400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:22819800-22825400	Weak transcription	Spleen	Spleen
13	chr10:22820000-22823000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:22820000-22823200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:22820000-22824400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:22820000-22826600	Weak transcription	Aorta	Aorta
17	chr10:22820200-22822800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:22820200-22823400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:22820200-22824000	Weak transcription	Primary B cells from cord blood	blood
20	chr10:22820200-22826200	Weak transcription	A549	lung
21	chr10:22820200-22827800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:22820200-22828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:22820400-22822800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:22820400-22824200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:22820400-22825200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:22820600-22830000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:22820800-22824200	Weak transcription	HSMM	muscle
28	chr10:22820800-22825400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:22820800-22828000	Weak transcription	HSMMtube	muscle
30	chr10:22821000-22823000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:22821000-22823800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:22821000-22823800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:22821000-22824200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:22821000-22825200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:22821200-22824000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr10:22821200-22824200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:22821200-22825000	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:22821400-22824000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:22821400-22825400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:22821400-22826000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:22821400-22826000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:22821400-22826200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:22821600-22823400	Weak transcription	GM12878-XiMat	blood
44	chr10:22821600-22827400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:22821800-22825200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:22821800-22825200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:22821800-22825400	Weak transcription	Lung	lung
48	chr10:22822000-22825200	Weak transcription	Dnd41	blood
49	chr10:22822000-22826200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr10:22822200-22825000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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