Variant report

Variant	rs7075634
Chromosome Location	chr10:22853102-22853103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22852845..22855648-chr10:22856213..22858809,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10047326	0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs10159730	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10430590	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1053454	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10741006	0.92[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10828314	0.84[CEU][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10828315	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10828316	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs10828317	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11013045	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11013046	0.86[ASW][hapmap];0.88[CEU][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11013048	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12146350	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12241748	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1830999	0.83[AFR][1000 genomes]
rs1831000	0.89[AFR][1000 genomes]
rs2296624	0.89[ASN][1000 genomes]
rs28666940	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35549346	0.85[ASN][1000 genomes]
rs3793752	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4532931	0.81[ASW][hapmap];0.89[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs4747442	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs4747443	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4748810	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4748811	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4748812	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4748813	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4748814	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4748816	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55867440	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7081744	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7082618	0.83[EUR][1000 genomes]
rs7088318	1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7094131	0.96[CEU][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7097972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs746203	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7901152	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7912551	0.85[AFR][1000 genomes]
rs7916922	0.89[AFR][1000 genomes]
rs7917185	0.84[AFR][1000 genomes]
rs8341	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs943189	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs943190	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9783154	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7075634	PIP5K2A	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22822200-22856000	Weak transcription	Small Intestine	intestine
2	chr10:22822800-22870200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:22825000-22863800	Weak transcription	Hela-S3	cervix
4	chr10:22825600-22888000	Weak transcription	HMEC	breast
5	chr10:22829000-22887400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:22830800-22861000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:22831200-22856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:22834800-22853200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr10:22836800-22856200	Weak transcription	HepG2	liver
10	chr10:22839000-22859400	Strong transcription	Primary T cells from cord blood	blood
11	chr10:22839400-22855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:22839600-22853400	Weak transcription	NHEK	skin
13	chr10:22839600-22865200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:22841000-22853800	Weak transcription	K562	blood
15	chr10:22841000-22855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:22841200-22855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:22842400-22855400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:22843800-22855400	Weak transcription	Colonic Mucosa	Colon
19	chr10:22844000-22855200	Weak transcription	Placenta	Placenta
20	chr10:22844000-22876600	Weak transcription	Right Ventricle	heart
21	chr10:22844200-22853200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:22844200-22853200	Weak transcription	Lung	lung
23	chr10:22844200-22853200	Weak transcription	Thymus	Thymus
24	chr10:22844200-22855200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:22844200-22855400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:22844200-22855400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:22844200-22861800	Weak transcription	HSMM	muscle
28	chr10:22844200-22862400	Weak transcription	Stomach Mucosa	stomach
29	chr10:22844200-22876200	Weak transcription	Ovary	ovary
30	chr10:22844200-22877200	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:22844200-22904800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:22844400-22853200	Weak transcription	NHDF-Ad	bronchial
33	chr10:22844400-22855800	Weak transcription	NH-A	brain
34	chr10:22844400-22856400	Weak transcription	NHLF	lung
35	chr10:22844400-22860600	Weak transcription	Fetal Kidney	kidney
36	chr10:22846200-22857200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:22846200-22862800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:22847400-22854400	Strong transcription	GM12878-XiMat	blood
39	chr10:22847400-22862400	Strong transcription	Fetal Thymus	thymus
40	chr10:22847400-22862800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr10:22848000-22859400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:22848200-22854600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:22848400-22854400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:22848600-22854400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:22849600-22861000	Weak transcription	Fetal Lung	lung
46	chr10:22849600-22879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:22849800-22856000	Weak transcription	HSMMtube	muscle
48	chr10:22850000-22853400	Weak transcription	Pancreas	Pancrea
49	chr10:22850000-22855200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr10:22850000-22855200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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