Variant report

Variant	rs10160390
Chromosome Location	chr11:15201160-15201161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10832370	0.83[EUR][1000 genomes]
rs11023466	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11023467	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs11023468	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023469	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1108010	0.88[CEU][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs1108011	0.84[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs12800439	0.84[EUR][1000 genomes]
rs1540153	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1573542	0.86[CHB][hapmap]
rs1573543	0.86[CHB][hapmap]
rs1573545	0.86[CHB][hapmap]
rs1714377	0.86[CHB][hapmap]
rs1714382	0.86[CHB][hapmap]
rs1792529	0.86[CHB][hapmap]
rs1792549	0.84[CEU][hapmap]
rs1792550	0.84[CEU][hapmap]
rs1792588	0.86[CHB][hapmap]
rs1792589	0.86[CHB][hapmap]
rs1945596	0.86[CHB][hapmap]
rs1945636	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2105795	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4756796	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756797	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756798	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757296	0.83[EUR][1000 genomes]
rs4757297	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs939050	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1048323	chr11:15180923-15201160	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1041166	chr11:15180923-15201266	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1036474	chr11:15181521-15209506	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1052622	chr11:15181614-15201160	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197600-15201200	Weak transcription	Gastric	stomach
2	chr11:15197600-15211600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:15198600-15201400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:15199000-15203200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:15199400-15201400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:15199800-15201600	Enhancers	NHLF	lung
8	chr11:15200000-15201400	Enhancers	Fetal Muscle Leg	muscle
9	chr11:15200000-15202600	Enhancers	NHDF-Ad	bronchial
10	chr11:15200200-15201400	Enhancers	HSMMtube	muscle
11	chr11:15200200-15202000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:15200200-15202200	Enhancers	HSMM	muscle
13	chr11:15200400-15201400	Enhancers	Osteobl	bone
14	chr11:15200400-15202600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:15200600-15201200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:15200600-15201400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:15200600-15201400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:15200600-15201400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:15200600-15202000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:15200600-15202200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:15201000-15201200	Enhancers	Fetal Brain Male	brain
22	chr11:15201000-15201200	Enhancers	Left Ventricle	heart
23	chr11:15201000-15201400	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:15201000-15202200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:15201000-15202200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:15201000-15202200	Enhancers	Aorta	Aorta

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