Variant report

Variant	rs1540153
Chromosome Location	chr11:15221017-15221018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160390	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832370	0.97[EUR][1000 genomes]
rs11023466	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs11023467	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023469	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1108010	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1108011	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1573542	0.86[CHB][hapmap]
rs1573543	0.86[CHB][hapmap]
rs1573545	0.86[CHB][hapmap]
rs1714335	0.81[CEU][hapmap]
rs1714338	0.81[CEU][hapmap]
rs1714377	0.86[CHB][hapmap]
rs1714382	0.86[CHB][hapmap]
rs1792529	0.86[CHB][hapmap]
rs1792549	0.96[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1792550	0.96[CEU][hapmap]
rs1792551	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1792588	0.86[CHB][hapmap]
rs1792589	0.86[CHB][hapmap]
rs1945596	0.86[CHB][hapmap]
rs1945636	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2105795	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2187533	0.93[EUR][1000 genomes]
rs4756796	0.88[ASN][1000 genomes]
rs4756797	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs939050	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15215800-15222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:15215800-15222000	Enhancers	NHDF-Ad	bronchial
3	chr11:15215800-15222000	Enhancers	Osteobl	bone
4	chr11:15216200-15222200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:15216600-15222000	Enhancers	Colon Smooth Muscle	Colon
6	chr11:15217200-15222600	Enhancers	Liver	Liver
7	chr11:15218000-15222000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:15218600-15221200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:15218600-15229400	Weak transcription	Gastric	stomach
10	chr11:15218800-15222600	Enhancers	Fetal Brain Male	brain
11	chr11:15219200-15221800	Enhancers	Stomach Smooth Muscle	stomach
12	chr11:15219200-15234600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:15219400-15223000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:15219400-15223200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:15219600-15221400	Enhancers	Rectal Smooth Muscle	rectum
16	chr11:15219800-15222400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:15220000-15221200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:15220000-15221200	Weak transcription	HSMMtube	muscle
19	chr11:15220000-15221800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:15220200-15222600	Weak transcription	Fetal Stomach	stomach
21	chr11:15220600-15221400	Enhancers	Aorta	Aorta
22	chr11:15220600-15222200	Enhancers	Fetal Muscle Leg	muscle
23	chr11:15220800-15221200	Weak transcription	Fetal Brain Female	brain
24	chr11:15220800-15221400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:15220800-15221600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:15220800-15221600	Enhancers	Adipose Nuclei	Adipose
27	chr11:15221000-15221200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:15221000-15221800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:15221000-15222600	Enhancers	Psoas Muscle	Psoas
30	chr11:15221000-15222800	Enhancers	Brain Germinal Matrix	brain
31	chr11:15221000-15222800	Enhancers	Pancreas	Pancrea

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