Variant report

Variant	rs11023466
Chromosome Location	chr11:15213963-15213964
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10160390	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs10832370	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023467	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023468	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023469	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1108010	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540151	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs1540153	0.96[CEU][hapmap];0.99[EUR][1000 genomes]
rs1540160	0.82[CHB][hapmap]
rs1540161	0.90[CHB][hapmap]
rs1620021	0.81[CHB][hapmap]
rs1792534	0.82[CHB][hapmap]
rs1792549	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1792550	0.92[CEU][hapmap]
rs1792551	0.82[EUR][1000 genomes]
rs1945636	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945637	1.00[JPT][hapmap]
rs2105795	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187533	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187534	1.00[JPT][hapmap]
rs4756797	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4756798	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4757297	0.98[EUR][1000 genomes]
rs872689	1.00[JPT][hapmap]
rs939050	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15201200-15218800	Weak transcription	Fetal Brain Male	brain
3	chr11:15203200-15216000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15205800-15216600	Weak transcription	Fetal Stomach	stomach
5	chr11:15208200-15216200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:15210000-15220600	Weak transcription	Aorta	Aorta
7	chr11:15211800-15215800	Weak transcription	NHDF-Ad	bronchial
8	chr11:15211800-15217200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:15212000-15215800	Weak transcription	Osteobl	bone
10	chr11:15212200-15215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:15212200-15220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:15212400-15214200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:15213000-15214400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:15213200-15218600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:15213600-15214000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:15213800-15214000	Enhancers	Liver	Liver

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