Variant report

Variant	rs1108011
Chromosome Location	chr11:15216785-15216786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15211301..15213872-chr11:15215693..15217396,3	K562	blood:
2	chr11:15211301..15213872-chr11:15215693..15217396,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10160390	0.84[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs10832370	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023467	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023468	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11023469	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1108010	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540151	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs1540153	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1540160	0.82[CHB][hapmap]
rs1540161	0.90[CHB][hapmap]
rs1620021	0.81[CHB][hapmap]
rs1792534	0.82[CHB][hapmap]
rs1792549	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs1792550	0.92[CEU][hapmap]
rs1792551	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1945636	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945637	1.00[JPT][hapmap]
rs2105795	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187533	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2187534	1.00[JPT][hapmap]
rs4756797	0.98[EUR][1000 genomes]
rs4756798	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs4757297	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs872689	1.00[JPT][hapmap]
rs939050	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15201200-15218800	Weak transcription	Fetal Brain Male	brain
3	chr11:15210000-15220600	Weak transcription	Aorta	Aorta
4	chr11:15211800-15217200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:15212200-15220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:15213200-15218600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:15215800-15217200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:15215800-15217200	Enhancers	NHLF	lung
9	chr11:15215800-15222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:15215800-15222000	Enhancers	NHDF-Ad	bronchial
11	chr11:15215800-15222000	Enhancers	Osteobl	bone
12	chr11:15216000-15217000	Weak transcription	Pancreas	Pancrea
13	chr11:15216000-15218000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:15216000-15218600	Enhancers	Fetal Intestine Large	intestine
15	chr11:15216200-15216800	Enhancers	Liver	Liver
16	chr11:15216200-15217400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:15216200-15218000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:15216200-15218200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:15216200-15218200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:15216200-15218600	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:15216200-15222200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:15216400-15217400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:15216400-15217400	Weak transcription	Fetal Kidney	kidney
24	chr11:15216400-15217600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:15216400-15218400	Enhancers	Stomach Mucosa	stomach
26	chr11:15216400-15218400	Enhancers	HepG2	liver
27	chr11:15216400-15219200	Enhancers	Fetal Intestine Small	intestine
28	chr11:15216600-15217000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:15216600-15217000	Enhancers	Small Intestine	intestine
30	chr11:15216600-15217200	Flanking Active TSS	A549	lung
31	chr11:15216600-15218400	Enhancers	Fetal Stomach	stomach
32	chr11:15216600-15219600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr11:15216600-15222000	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links