Variant report

Variant	rs11023468
Chromosome Location	chr11:15218181-15218182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15214458..15216494-chr11:15217600..15220011,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10160390	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832370	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11023466	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11023467	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11023469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108010	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1108011	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1540153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573542	0.86[CHB][hapmap]
rs1573543	0.86[CHB][hapmap]
rs1573545	0.86[CHB][hapmap]
rs1714335	0.81[CEU][hapmap]
rs1714338	0.81[CEU][hapmap]
rs1714377	0.86[CHB][hapmap]
rs1714382	0.86[CHB][hapmap]
rs1792529	0.86[CHB][hapmap]
rs1792549	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1792550	0.96[CEU][hapmap]
rs1792551	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs1792588	0.86[CHB][hapmap]
rs1792589	0.86[CHB][hapmap]
rs1945596	0.86[CHB][hapmap]
rs1945636	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2105795	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2187533	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756796	0.91[ASN][1000 genomes]
rs4756797	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757297	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939050	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15197800-15221000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:15201200-15218800	Weak transcription	Fetal Brain Male	brain
3	chr11:15210000-15220600	Weak transcription	Aorta	Aorta
4	chr11:15212200-15220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:15213200-15218600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:15215800-15222000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:15215800-15222000	Enhancers	NHDF-Ad	bronchial
8	chr11:15215800-15222000	Enhancers	Osteobl	bone
9	chr11:15216000-15218600	Enhancers	Fetal Intestine Large	intestine
10	chr11:15216200-15218200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:15216200-15218200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:15216200-15218600	Enhancers	Duodenum Mucosa	Duodenum
13	chr11:15216200-15222200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:15216400-15218400	Enhancers	Stomach Mucosa	stomach
15	chr11:15216400-15218400	Enhancers	HepG2	liver
16	chr11:15216400-15219200	Enhancers	Fetal Intestine Small	intestine
17	chr11:15216600-15218400	Enhancers	Fetal Stomach	stomach
18	chr11:15216600-15219600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:15216600-15222000	Enhancers	Colon Smooth Muscle	Colon
20	chr11:15217000-15218600	Enhancers	Gastric	stomach
21	chr11:15217000-15219200	Enhancers	Pancreas	Pancrea
22	chr11:15217200-15218200	Enhancers	A549	lung
23	chr11:15217200-15218600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:15217200-15219000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr11:15217200-15219800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:15217200-15222600	Enhancers	Liver	Liver
27	chr11:15217400-15218200	Enhancers	Small Intestine	intestine
28	chr11:15217400-15218600	Enhancers	Fetal Kidney	kidney
29	chr11:15217400-15219600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:15217400-15219800	Weak transcription	NH-A	brain
31	chr11:15217400-15220800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:15217600-15219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:15217600-15219200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:15217800-15219600	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:15218000-15218200	Enhancers	Lung	lung
36	chr11:15218000-15218200	Enhancers	NHLF	lung
37	chr11:15218000-15218400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:15218000-15219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:15218000-15219600	Weak transcription	HSMMtube	muscle
40	chr11:15218000-15220000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:15218000-15222000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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