Variant report

Variant	rs10166833
Chromosome Location	chr2:211993683-211993684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10084326	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10190808	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191921	0.88[AMR][1000 genomes]
rs10198500	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10201572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10203100	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210622	0.85[AMR][1000 genomes]
rs11885348	0.88[AMR][1000 genomes]
rs11901419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13407023	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1595063	1.00[CHB][hapmap]
rs1595322	0.85[AMR][1000 genomes]
rs1821657	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1837137	0.89[AMR][1000 genomes]
rs4673581	0.86[AMR][1000 genomes]
rs6435604	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72941629	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72941633	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460063	chr2:211981894-211996803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv584311	chr2:211981894-211996803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3383196	chr2:211992907-211996105	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3392696	chr2:211993457-211995755	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211991800-211994600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:211993000-211994200	Enhancers	Hela-S3	cervix
3	chr2:211993200-211993800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:211993400-211997000	Weak transcription	NHEK	skin
5	chr2:211993600-211994800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:211993600-211994800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:211993600-211994800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:211993600-211996800	Weak transcription	HMEC	breast
9	chr2:211993600-211997400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links