Variant report

Variant	rs1837137
Chromosome Location	chr2:212008360-212008361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10084326	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10166833	0.89[AMR][1000 genomes]
rs10190808	0.88[AMR][1000 genomes]
rs10191921	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10198500	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10201572	0.89[AMR][1000 genomes]
rs10203100	0.88[AMR][1000 genomes]
rs10210622	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11885348	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901419	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12463546	0.92[ASN][1000 genomes]
rs12475356	0.92[ASN][1000 genomes]
rs13407023	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595322	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1866195	0.89[ASN][1000 genomes]
rs4356605	0.89[ASN][1000 genomes]
rs4672607	0.90[ASN][1000 genomes]
rs4673581	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4673591	0.92[ASN][1000 genomes]
rs4673592	0.92[ASN][1000 genomes]
rs4673593	0.89[ASN][1000 genomes]
rs4673594	0.89[ASN][1000 genomes]
rs57962173	0.89[ASN][1000 genomes]
rs58740402	0.92[ASN][1000 genomes]
rs59871753	0.89[ASN][1000 genomes]
rs6435604	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72941629	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72941633	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73075664	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211998800-212009400	Weak transcription	HSMM	muscle
2	chr2:212004600-212008600	Weak transcription	HMEC	breast
3	chr2:212005400-212008600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:212008000-212009600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:212008000-212010800	Enhancers	Hela-S3	cervix
6	chr2:212008200-212008800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:212008200-212009200	Enhancers	Muscle Satellite Cultured Cells	--

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