Variant report

Variant	rs13407023
Chromosome Location	chr2:212023062-212023063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:211958444..211959027-chr2:212022593..212023191,2	MCF-7	breast:
2	chr2:212022878..212025223-chr2:212045457..212047124,2	K562	blood:
3	chr2:211949706..211950500-chr2:212022258..212023250,2	MCF-7	breast:
4	chr2:212022243..212024951-chr2:212075273..212077446,2	MCF-7	breast:
5	chr2:211482310..211483112-chr2:212022669..212023186,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10084326	0.84[AMR][1000 genomes]
rs10166833	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10190808	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10191921	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10198500	0.82[AMR][1000 genomes]
rs10201572	0.85[AMR][1000 genomes]
rs10203100	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10210622	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11885348	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11901419	0.85[AMR][1000 genomes]
rs12463546	0.95[ASN][1000 genomes]
rs12475356	0.95[ASN][1000 genomes]
rs1595063	1.00[CHB][hapmap]
rs1595322	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1821657	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs1837137	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1866195	0.92[ASN][1000 genomes]
rs4356605	0.92[ASN][1000 genomes]
rs4672607	0.94[ASN][1000 genomes]
rs4673581	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4673591	0.95[ASN][1000 genomes]
rs4673592	0.95[ASN][1000 genomes]
rs4673593	0.92[ASN][1000 genomes]
rs4673594	0.92[ASN][1000 genomes]
rs57962173	0.92[ASN][1000 genomes]
rs58740402	0.95[ASN][1000 genomes]
rs59871753	0.92[ASN][1000 genomes]
rs6435604	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941629	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72941633	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075664	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875774	chr2:212016056-212047120	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv875775	chr2:212021755-212047120	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212022600-212026000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:212022800-212025800	Weak transcription	HSMM	muscle
3	chr2:212022800-212026000	Weak transcription	Osteobl	bone

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