Variant report
| Variant | rs72941629 |
|---|---|
| Chromosome Location | chr2:212026824-212026825 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10166833 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10190808 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10191921 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10201572 | 0.81[AMR][1000 genomes] |
| rs10203100 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10210622 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11885348 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11901419 | 0.81[AMR][1000 genomes] |
| rs12463546 | 0.95[ASN][1000 genomes] |
| rs12475356 | 0.95[ASN][1000 genomes] |
| rs13407023 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1595322 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1837137 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1866195 | 0.92[ASN][1000 genomes] |
| rs4356605 | 0.92[ASN][1000 genomes] |
| rs4672607 | 0.94[ASN][1000 genomes] |
| rs4673581 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4673591 | 0.95[ASN][1000 genomes] |
| rs4673592 | 0.95[ASN][1000 genomes] |
| rs4673593 | 0.92[ASN][1000 genomes] |
| rs4673594 | 0.92[ASN][1000 genomes] |
| rs57962173 | 0.92[ASN][1000 genomes] |
| rs58740402 | 0.95[ASN][1000 genomes] |
| rs59871753 | 0.92[ASN][1000 genomes] |
| rs6435604 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72941633 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73075664 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012193 | chr2:211684524-212072213 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834521 | chr2:211918881-212057872 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv875773 | chr2:211973600-212041403 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv875774 | chr2:212016056-212047120 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv875775 | chr2:212021755-212047120 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212026400-212027600 | Weak transcription | Hela-S3 | cervix |
