Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10166875	0.83[ASN][1000 genomes]
rs10169970	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10173683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183152	0.83[ASN][1000 genomes]
rs1829615	0.86[ASW][hapmap]
rs1851192	1.00[CHB][hapmap]
rs2371308	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2887994	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4016512	0.83[ASN][1000 genomes]
rs4673628	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.83[ASN][1000 genomes]
rs6714837	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6741480	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6743138	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6755268	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7562364	0.83[ASN][1000 genomes]
rs7562573	0.83[ASN][1000 genomes]
rs7565321	0.83[ASN][1000 genomes]
rs7565327	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7591647	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10173674	PLEKHM3	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
3	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
4	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney
5	chr2:212544200-212545800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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