Variant report

Variant	rs10166875
Chromosome Location	chr2:212543560-212543561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10169970	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173674	0.83[ASN][1000 genomes]
rs10173683	0.83[ASN][1000 genomes]
rs10176100	0.83[ASN][1000 genomes]
rs10179515	0.83[ASN][1000 genomes]
rs10183152	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398913	0.91[EUR][1000 genomes]
rs17335518	0.83[EUR][1000 genomes]
rs1851169	0.93[EUR][1000 genomes]
rs1851170	0.87[EUR][1000 genomes]
rs1983399	0.92[EUR][1000 genomes]
rs2371308	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887994	0.83[ASN][1000 genomes]
rs4016512	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4673628	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62185367	0.82[EUR][1000 genomes]
rs6714837	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741480	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743138	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755268	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562364	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562573	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565321	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565327	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579224	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7591647	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
4	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
5	chr2:212538200-212543800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney
7	chr2:212543400-212543800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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