Variant report

Variant	rs10169970
Chromosome Location	chr2:212544024-212544025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10166875	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173674	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10173683	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10176100	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10179515	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10183152	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398913	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17335518	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1851169	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1851170	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1851192	1.00[CHB][hapmap]
rs1983399	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2371308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887994	0.83[ASN][1000 genomes]
rs4016512	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4673628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62185367	0.89[EUR][1000 genomes]
rs6714837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741480	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755268	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562364	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562573	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565321	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579224	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7591647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
4	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
5	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney
6	chr2:212543600-212544200	Enhancers	HUVEC	blood vessel
7	chr2:212543800-212544200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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