Variant report

Variant	rs2887994
Chromosome Location	chr2:212553753-212553754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10166875	0.83[ASN][1000 genomes]
rs10169970	0.83[ASN][1000 genomes]
rs10173674	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173683	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176100	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179515	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183152	0.83[ASN][1000 genomes]
rs2371308	0.83[ASN][1000 genomes]
rs4016512	0.83[ASN][1000 genomes]
rs4673628	0.83[ASN][1000 genomes]
rs6714837	0.83[ASN][1000 genomes]
rs6741480	0.83[ASN][1000 genomes]
rs6743138	0.83[ASN][1000 genomes]
rs6755268	0.83[ASN][1000 genomes]
rs7562364	0.83[ASN][1000 genomes]
rs7562573	0.83[ASN][1000 genomes]
rs7565321	0.83[ASN][1000 genomes]
rs7565327	0.83[ASN][1000 genomes]
rs7591647	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212547200-212568600	Weak transcription	Fetal Kidney	kidney
2	chr2:212550400-212569000	Weak transcription	Fetal Heart	heart
3	chr2:212552400-212558400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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