Variant report

Variant	rs10174385
Chromosome Location	chr2:210518613-210518614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10179315	0.92[EUR][1000 genomes]
rs10208961	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1039826	0.92[EUR][1000 genomes]
rs10497931	1.00[EUR][1000 genomes]
rs13000863	1.00[EUR][1000 genomes]
rs13404929	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13424278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1396778	0.92[EUR][1000 genomes]
rs1509467	0.92[EUR][1000 genomes]
rs1509471	0.92[EUR][1000 genomes]
rs16843574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1828281	0.92[EUR][1000 genomes]
rs1949041	0.92[EUR][1000 genomes]
rs1962197	0.92[EUR][1000 genomes]
rs1967262	0.92[EUR][1000 genomes]
rs2663656	0.92[EUR][1000 genomes]
rs2710476	0.92[EUR][1000 genomes]
rs34534060	0.84[EUR][1000 genomes]
rs6742070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6752060	0.92[EUR][1000 genomes]
rs71420765	0.84[EUR][1000 genomes]
rs71420769	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7566048	0.92[EUR][1000 genomes]
rs9288411	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210507800-210525800	Weak transcription	NH-A	brain
2	chr2:210508000-210519000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:210508000-210527800	Weak transcription	HUVEC	blood vessel
4	chr2:210508400-210527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:210513600-210525600	Weak transcription	Fetal Brain Male	brain
6	chr2:210514000-210528000	Weak transcription	Ovary	ovary
7	chr2:210515800-210520400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:210516200-210519400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:210516200-210525800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:210516400-210530200	Weak transcription	Pancreas	Pancrea
11	chr2:210516600-210525800	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:210516600-210526000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:210516600-210526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:210517800-210519200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:210517800-210520000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210517800-210522200	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr2:210518000-210518800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210518000-210519000	Strong transcription	Fetal Brain Female	brain
19	chr2:210518000-210519200	Strong transcription	Brain Anterior Caudate	brain
20	chr2:210518000-210526000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:210518200-210522800	Weak transcription	Left Ventricle	heart
22	chr2:210518200-210526000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:210518200-210526000	Weak transcription	Brain Angular Gyrus	brain
24	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
25	chr2:210518400-210524000	Weak transcription	Brain Germinal Matrix	brain
26	chr2:210518600-210518800	Enhancers	Gastric	stomach

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