Variant report

Variant	rs10176602
Chromosome Location	chr2:74120785-74120786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74119557..74121562-chr2:74683599..74685996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239779	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12467259	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13387647	0.95[CEU][hapmap];0.82[JPT][hapmap]
rs2070581	0.86[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs2163539	0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs3813232	0.84[ASW][hapmap];0.95[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59343451	0.82[ASN][1000 genomes]
rs6752983	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582213	chr2:74120785-74129474	Bivalent Enhancer Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74115000-74123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:74117200-74121400	Weak transcription	Gastric	stomach
3	chr2:74118200-74123400	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:74118200-74123600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:74118600-74128400	Weak transcription	HMEC	breast
6	chr2:74119400-74124600	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr2:74119600-74120800	Flanking Active TSS	NHLF	lung
8	chr2:74119600-74122800	Active TSS	Aorta	Aorta
9	chr2:74119800-74120800	Active TSS	Rectal Smooth Muscle	rectum
10	chr2:74119800-74124800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr2:74120000-74121400	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr2:74120000-74122400	Bivalent/Poised TSS	NH-A	brain
13	chr2:74120200-74121000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:74120200-74121200	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr2:74120200-74122200	Active TSS	Duodenum Mucosa	Duodenum
16	chr2:74120200-74122400	Active TSS	Colonic Mucosa	Colon
17	chr2:74120200-74122400	Active TSS	Esophagus	oesophagus
18	chr2:74120200-74122400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
19	chr2:74120200-74123000	Weak transcription	Fetal Thymus	thymus
20	chr2:74120200-74123200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:74120200-74127600	Active TSS	Fetal Intestine Small	intestine
22	chr2:74120200-74130200	Active TSS	Fetal Intestine Large	intestine
23	chr2:74120400-74120800	Active TSS	Lung	lung
24	chr2:74120400-74121000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
25	chr2:74120400-74123600	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:74120400-74123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:74120400-74124200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr2:74120400-74124400	Weak transcription	Stomach Mucosa	stomach
29	chr2:74120400-74128800	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
30	chr2:74120400-74130000	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
31	chr2:74120600-74120800	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr2:74120600-74121000	Active TSS	Ovary	ovary
33	chr2:74120600-74121000	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr2:74120600-74121400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:74120600-74123600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr2:74120600-74124000	Weak transcription	Fetal Muscle Trunk	muscle

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