Variant report

Variant	rs3813232
Chromosome Location	chr2:74119619-74119620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74119557..74121562-chr2:74683599..74685996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239779	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10176602	0.84[ASW][hapmap];0.95[CEU][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12467259	0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13397133	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs1474335	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs17009417	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17009421	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17009424	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs17009428	0.80[CHB][hapmap]
rs17009429	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17009430	0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap]
rs17009433	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs17009436	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2070581	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs2163539	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2303987	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs3738846	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs57950796	0.80[ASN][1000 genomes]
rs58819058	0.80[ASN][1000 genomes]
rs59343451	0.95[ASN][1000 genomes]
rs61308121	0.80[ASN][1000 genomes]
rs6546875	0.82[JPT][hapmap]
rs6726010	0.86[CHB][hapmap]
rs6737597	0.80[CHB][hapmap]
rs6752983	0.95[ASN][1000 genomes]
rs72814169	0.80[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74115000-74123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:74117200-74121400	Weak transcription	Gastric	stomach
3	chr2:74117600-74120200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:74118000-74120400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:74118200-74123400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:74118200-74123600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:74118400-74119800	Flanking Active TSS	Stomach Smooth Muscle	stomach
8	chr2:74118600-74120200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:74118600-74120200	Weak transcription	Lung	lung
10	chr2:74118600-74128400	Weak transcription	HMEC	breast
11	chr2:74119400-74119800	Flanking Active TSS	Colon Smooth Muscle	Colon
12	chr2:74119400-74120000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr2:74119400-74120200	Enhancers	Placenta	Placenta
14	chr2:74119400-74124600	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr2:74119600-74119800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:74119600-74119800	Enhancers	Ovary	ovary
17	chr2:74119600-74119800	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:74119600-74120000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:74119600-74120000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:74119600-74120000	Enhancers	Esophagus	oesophagus
21	chr2:74119600-74120000	Enhancers	Fetal Intestine Small	intestine
22	chr2:74119600-74120000	Bivalent Enhancer	NH-A	brain
23	chr2:74119600-74120200	Flanking Active TSS	Fetal Stomach	stomach
24	chr2:74119600-74120400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr2:74119600-74120400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:74119600-74120400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:74119600-74120400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr2:74119600-74120400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:74119600-74120400	Enhancers	Fetal Muscle Leg	muscle
30	chr2:74119600-74120600	Enhancers	Fetal Muscle Trunk	muscle
31	chr2:74119600-74120800	Flanking Active TSS	NHLF	lung
32	chr2:74119600-74122800	Active TSS	Aorta	Aorta

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