Variant report

Variant	rs2163539
Chromosome Location	chr2:74116536-74116537
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74110164..74112931-chr2:74114874..74116981,2	K562	blood:
2	chr2:74113840..74116714-chr2:74183474..74185515,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10176602	0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs1036113	0.82[JPT][hapmap]
rs12467259	0.90[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs13387647	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13397133	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1474335	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs17009417	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17009421	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17009424	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17009428	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17009429	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17009430	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17009433	0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs17009436	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2070581	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2303987	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3738846	0.81[CHB][hapmap]
rs3813232	0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs45575736	0.83[ASN][1000 genomes]
rs57950796	0.84[ASN][1000 genomes]
rs58819058	0.84[ASN][1000 genomes]
rs59343451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308121	0.84[ASN][1000 genomes]
rs6726010	0.81[CHB][hapmap]
rs6737597	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6752983	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs72814150	0.83[ASN][1000 genomes]
rs72814154	0.83[ASN][1000 genomes]
rs72814161	0.83[ASN][1000 genomes]
rs72814169	0.84[ASN][1000 genomes]
rs7594485	0.82[JPT][hapmap]
rs9679205	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2163539	STAMBP	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74114800-74118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:74115000-74118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:74115000-74118800	Enhancers	Colon Smooth Muscle	Colon
4	chr2:74115000-74119600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:74115000-74123600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:74115400-74117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:74115400-74117600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:74116000-74117000	Weak transcription	Stomach Smooth Muscle	stomach

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