Variant report

Variant	rs13397133
Chromosome Location	chr2:74096178-74096179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74095488..74097944-chr2:74098084..74100045,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1036113	0.82[JPT][hapmap]
rs12467259	0.85[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs13387647	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1474335	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17009417	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17009421	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17009424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17009428	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009429	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17009430	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17009433	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2070581	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs2163539	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2303987	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3738846	0.86[CHB][hapmap]
rs3813232	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs45575736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57950796	0.98[ASN][1000 genomes]
rs58819058	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59343451	0.83[ASN][1000 genomes]
rs61308121	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726010	0.86[CHB][hapmap]
rs6737597	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6752983	0.84[ASN][1000 genomes]
rs72814150	1.00[ASN][1000 genomes]
rs72814154	1.00[ASN][1000 genomes]
rs72814161	1.00[ASN][1000 genomes]
rs72814169	0.98[ASN][1000 genomes]
rs7594485	0.82[JPT][hapmap]
rs9679205	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13397133	STAMBP	cis	cerebellum	SCAN
rs13397133	MOGS	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:74088200-74097000	Weak transcription	Fetal Heart	heart
4	chr2:74088200-74097200	Weak transcription	NHDF-Ad	bronchial
5	chr2:74091600-74097200	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:74092000-74099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
8	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:74092600-74099400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:74092800-74097400	Weak transcription	Right Ventricle	heart
11	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
12	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
13	chr2:74093600-74097200	Weak transcription	HMEC	breast
14	chr2:74093800-74097000	Weak transcription	Aorta	Aorta
15	chr2:74093800-74099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:74093800-74101800	Weak transcription	HepG2	liver
17	chr2:74094000-74097200	Weak transcription	Esophagus	oesophagus
18	chr2:74094000-74097200	Weak transcription	Left Ventricle	heart
19	chr2:74094000-74097200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:74094000-74097800	Weak transcription	Spleen	Spleen
21	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:74094200-74096400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:74094200-74097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:74094200-74097000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:74094200-74097000	Weak transcription	Fetal Brain Female	brain
29	chr2:74094200-74097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:74094200-74097000	Weak transcription	HSMMtube	muscle
31	chr2:74094200-74097000	Weak transcription	Osteobl	bone
32	chr2:74094200-74097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:74094200-74097200	Weak transcription	Adipose Nuclei	Adipose
34	chr2:74094200-74097200	Weak transcription	Brain Angular Gyrus	brain
35	chr2:74094200-74097200	Weak transcription	Fetal Lung	lung
36	chr2:74094200-74097200	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr2:74094200-74097200	Weak transcription	NHLF	lung
40	chr2:74094200-74097400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr2:74094200-74097400	Weak transcription	Primary T cells from cord blood	blood
42	chr2:74094200-74097400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:74094200-74097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:74094200-74097400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:74094200-74097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:74094200-74097600	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr2:74094200-74097800	Weak transcription	Colonic Mucosa	Colon
48	chr2:74094200-74098000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr2:74094200-74098800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr2:74094200-74099200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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