Variant report

Variant	rs17009433
Chromosome Location	chr2:74100011-74100012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:74099942-74100220	A549	lung:	n/a	n/a
2	CEBPB	chr2:74099965-74100409	HepG2	liver:	n/a	n/a
3	CEBPB	chr2:74099981-74100203	IMR90	lung:	n/a	n/a
4	CEBPB	chr2:74099942-74100188	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74095488..74097944-chr2:74098084..74100045,2	K562	blood:
2	chr2:74097880..74100787-chr2:74100945..74103812,3	K562	blood:

Variant related genes	Relation type
ENSG00000271536	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1036113	0.82[JPT][hapmap]
rs12467259	0.85[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs13387647	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs13397133	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474335	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17009417	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17009421	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs17009424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17009428	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009429	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17009430	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17009436	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2070581	0.90[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs2163539	0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2303987	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3738846	0.86[CHB][hapmap]
rs3813232	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs45575736	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57950796	0.98[ASN][1000 genomes]
rs58819058	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59343451	0.83[ASN][1000 genomes]
rs61308121	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6726010	0.86[CHB][hapmap]
rs6737597	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6752983	0.84[ASN][1000 genomes]
rs72814150	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72814154	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72814161	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72814169	0.98[ASN][1000 genomes]
rs7594485	0.82[JPT][hapmap]
rs9679205	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17009433	MOGS	cis	cerebellum	SCAN
rs17009433	STAMBP	cis	cerebellum	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
4	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
6	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
7	chr2:74093800-74101800	Weak transcription	HepG2	liver
8	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:74094200-74100200	Weak transcription	Gastric	stomach
11	chr2:74094200-74100600	Weak transcription	Fetal Kidney	kidney
12	chr2:74094200-74100800	Weak transcription	Brain Anterior Caudate	brain
13	chr2:74094200-74101000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:74094200-74101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:74094200-74101000	Weak transcription	Ovary	ovary
16	chr2:74094200-74101200	Weak transcription	Thymus	Thymus
17	chr2:74094200-74101400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:74094200-74101400	Weak transcription	Lung	lung
19	chr2:74094200-74101600	Weak transcription	Primary B cells from cord blood	blood
20	chr2:74094200-74101600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:74094200-74103400	Weak transcription	Fetal Thymus	thymus
22	chr2:74094200-74104000	Weak transcription	NHEK	skin
23	chr2:74094200-74104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:74094200-74104400	Weak transcription	K562	blood
25	chr2:74094200-74104600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr2:74094400-74101000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr2:74094400-74101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr2:74094400-74101000	Weak transcription	Dnd41	blood
29	chr2:74094400-74103000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr2:74094400-74103800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr2:74094400-74104000	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr2:74094400-74104200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr2:74094400-74104600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:74094600-74101000	Weak transcription	Fetal Intestine Small	intestine
35	chr2:74094600-74101200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr2:74094800-74104600	Weak transcription	GM12878-XiMat	blood
37	chr2:74097600-74100400	Weak transcription	HSMM	muscle
38	chr2:74097600-74101000	Weak transcription	Brain Angular Gyrus	brain
39	chr2:74097600-74101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr2:74097600-74102600	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:74097600-74114600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr2:74097800-74100400	Weak transcription	Fetal Lung	lung
43	chr2:74097800-74104200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:74098000-74100400	Weak transcription	Colon Smooth Muscle	Colon
45	chr2:74098000-74100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr2:74098000-74101400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr2:74098000-74101800	Weak transcription	Primary T cells from cord blood	blood
48	chr2:74098000-74101800	Weak transcription	Osteobl	bone
49	chr2:74098000-74102200	Weak transcription	NH-A	brain
50	chr2:74098000-74103200	Weak transcription	Placenta	Placenta

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