Variant report

Variant	rs17009417
Chromosome Location	chr2:74095541-74095542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74090246..74091943-chr2:74093946..74096176,2	MCF-7	breast:
2	chr2:74095488..74097944-chr2:74098084..74100045,2	K562	blood:
3	chr2:74086563..74089474-chr2:74092374..74096143,3	K562	blood:

Variant related genes	Relation type
ENSG00000124356	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1036113	0.82[JPT][hapmap]
rs12467259	0.85[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs13387647	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs13397133	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1474335	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17009421	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17009424	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17009428	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009429	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009430	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009433	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17009436	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2070581	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs2163539	0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2303987	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738846	0.86[CHB][hapmap]
rs3813232	0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[JPT][hapmap]
rs45575736	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57950796	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58819058	0.98[ASN][1000 genomes]
rs59343451	0.83[ASN][1000 genomes]
rs61308121	0.98[ASN][1000 genomes]
rs6726010	0.86[CHB][hapmap]
rs6737597	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6752983	0.84[ASN][1000 genomes]
rs72814150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72814169	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7594485	0.82[JPT][hapmap]
rs9679205	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74087600-74095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:74088200-74096000	Weak transcription	Fetal Brain Male	brain
5	chr2:74088200-74097000	Weak transcription	Fetal Heart	heart
6	chr2:74088200-74097200	Weak transcription	NHDF-Ad	bronchial
7	chr2:74091600-74095600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:74091600-74097200	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:74092000-74099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
11	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:74092600-74099400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:74092800-74097400	Weak transcription	Right Ventricle	heart
14	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
15	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
16	chr2:74093600-74097200	Weak transcription	HMEC	breast
17	chr2:74093800-74097000	Weak transcription	Aorta	Aorta
18	chr2:74093800-74099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr2:74093800-74101800	Weak transcription	HepG2	liver
20	chr2:74094000-74095600	Weak transcription	Brain Germinal Matrix	brain
21	chr2:74094000-74095800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:74094000-74097200	Weak transcription	Esophagus	oesophagus
23	chr2:74094000-74097200	Weak transcription	Left Ventricle	heart
24	chr2:74094000-74097200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:74094000-74097800	Weak transcription	Spleen	Spleen
26	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:74094200-74095800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr2:74094200-74095800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr2:74094200-74096000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:74094200-74096000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:74094200-74096000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:74094200-74096000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr2:74094200-74096400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:74094200-74097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:74094200-74097000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:74094200-74097000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:74094200-74097000	Weak transcription	Fetal Brain Female	brain
40	chr2:74094200-74097000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:74094200-74097000	Weak transcription	HSMMtube	muscle
42	chr2:74094200-74097000	Weak transcription	Osteobl	bone
43	chr2:74094200-74097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:74094200-74097200	Weak transcription	Adipose Nuclei	Adipose
45	chr2:74094200-74097200	Weak transcription	Brain Angular Gyrus	brain
46	chr2:74094200-74097200	Weak transcription	Fetal Lung	lung
47	chr2:74094200-74097200	Weak transcription	Fetal Muscle Leg	muscle
48	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr2:74094200-74097200	Weak transcription	NHLF	lung

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