Variant report

Variant	rs17009428
Chromosome Location	chr2:74097050-74097051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:74096968..74099878-chr2:74103066..74104591,2	MCF-7	breast:
2	chr2:74095488..74097944-chr2:74098084..74100045,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1036113	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10519327	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11126420	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11885317	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11886615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13387647	0.81[CHB][hapmap]
rs13397133	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009417	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009421	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009424	0.91[CHB][hapmap]
rs17009429	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009430	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009433	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs17009436	0.91[CHB][hapmap]
rs2070581	0.80[CHB][hapmap]
rs2163539	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2303987	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs33990056	0.91[ASN][1000 genomes]
rs3738846	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3813229	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs3813232	0.80[CHB][hapmap]
rs4852983	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs56383013	0.81[ASN][1000 genomes]
rs56801363	0.82[ASN][1000 genomes]
rs57394861	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61091264	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6546875	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs6726010	0.95[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs6737597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7594485	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7606408	0.83[ASN][1000 genomes]
rs9309477	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9808106	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9808471	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
2	chr2:74088000-74100400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:74088200-74097200	Weak transcription	NHDF-Ad	bronchial
4	chr2:74091600-74097200	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:74092000-74099400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:74092000-74100800	Weak transcription	Pancreas	Pancrea
7	chr2:74092000-74101800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:74092600-74099400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:74092800-74097400	Weak transcription	Right Ventricle	heart
10	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
11	chr2:74093400-74102200	Weak transcription	Psoas Muscle	Psoas
12	chr2:74093600-74097200	Weak transcription	HMEC	breast
13	chr2:74093800-74099000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:74093800-74101800	Weak transcription	HepG2	liver
15	chr2:74094000-74097200	Weak transcription	Esophagus	oesophagus
16	chr2:74094000-74097200	Weak transcription	Left Ventricle	heart
17	chr2:74094000-74097200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:74094000-74097800	Weak transcription	Spleen	Spleen
19	chr2:74094000-74100800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:74094000-74102000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:74094200-74097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:74094200-74097200	Weak transcription	Adipose Nuclei	Adipose
23	chr2:74094200-74097200	Weak transcription	Brain Angular Gyrus	brain
24	chr2:74094200-74097200	Weak transcription	Fetal Lung	lung
25	chr2:74094200-74097200	Weak transcription	Fetal Muscle Leg	muscle
26	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:74094200-74097200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr2:74094200-74097200	Weak transcription	NHLF	lung
29	chr2:74094200-74097400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:74094200-74097400	Weak transcription	Primary T cells from cord blood	blood
31	chr2:74094200-74097400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:74094200-74097400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:74094200-74097400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr2:74094200-74097600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr2:74094200-74097600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr2:74094200-74097800	Weak transcription	Colonic Mucosa	Colon
37	chr2:74094200-74098000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:74094200-74098800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr2:74094200-74099200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr2:74094200-74099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr2:74094200-74099200	Weak transcription	Liver	Liver
42	chr2:74094200-74100200	Weak transcription	Gastric	stomach
43	chr2:74094200-74100600	Weak transcription	Fetal Kidney	kidney
44	chr2:74094200-74100800	Weak transcription	Brain Anterior Caudate	brain
45	chr2:74094200-74101000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr2:74094200-74101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr2:74094200-74101000	Weak transcription	Ovary	ovary
48	chr2:74094200-74101200	Weak transcription	Thymus	Thymus
49	chr2:74094200-74101400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:74094200-74101400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links