Variant report

Variant	rs9309477
Chromosome Location	chr2:74103665-74103666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74096968..74099878-chr2:74103066..74104591,2	MCF-7	breast:
2	chr2:74103145..74104933-chr2:74212158..74213816,2	K562	blood:
3	chr2:74097880..74100787-chr2:74100945..74103812,3	K562	blood:

Variant related genes	Relation type
ENSG00000235499	Chromatin interaction
ENSG00000255989	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10519327	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11126420	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11885317	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11886615	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17009428	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33990056	0.92[ASN][1000 genomes]
rs3738846	0.93[ASN][1000 genomes]
rs56383013	0.82[ASN][1000 genomes]
rs56801363	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57394861	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61091264	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6726010	0.93[ASN][1000 genomes]
rs6737597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606408	0.84[ASN][1000 genomes]
rs9808106	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9808471	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74092800-74104600	Weak transcription	Hela-S3	cervix
2	chr2:74094200-74104000	Weak transcription	NHEK	skin
3	chr2:74094200-74104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:74094200-74104400	Weak transcription	K562	blood
5	chr2:74094200-74104600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:74094400-74103800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:74094400-74104000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:74094400-74104200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:74094400-74104600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr2:74094800-74104600	Weak transcription	GM12878-XiMat	blood
11	chr2:74097600-74114600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:74097800-74104200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:74098000-74104000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:74098000-74104200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:74098000-74104600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr2:74098400-74104200	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:74099800-74104000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:74100000-74104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:74100600-74104800	Weak transcription	Adipose Nuclei	Adipose
20	chr2:74101000-74104000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr2:74101400-74103800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:74101600-74104200	Enhancers	Colon Smooth Muscle	Colon
23	chr2:74102800-74104200	Enhancers	Rectal Smooth Muscle	rectum
24	chr2:74103000-74104200	Weak transcription	HepG2	liver

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