Variant report

Variant	rs6726010
Chromosome Location	chr2:74091327-74091328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74090246..74091943-chr2:74093946..74096176,2	MCF-7	breast:
2	chr2:74084294..74085854-chr2:74090928..74093869,2	K562	blood:
3	chr2:74084275..74085854-chr2:74090470..74092428,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1036113	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10519327	0.91[ASN][1000 genomes]
rs11126420	0.93[ASN][1000 genomes]
rs11885317	0.88[ASN][1000 genomes]
rs11886615	0.94[ASN][1000 genomes]
rs12467259	0.81[CHB][hapmap]
rs13387647	0.81[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13397133	0.86[CHB][hapmap]
rs1474335	0.80[CHB][hapmap]
rs17009417	0.86[CHB][hapmap]
rs17009421	0.86[CHB][hapmap]
rs17009424	0.86[CHB][hapmap]
rs17009428	0.95[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs17009429	0.86[CHB][hapmap]
rs17009430	0.86[CHB][hapmap]
rs17009433	0.86[CHB][hapmap]
rs17009436	0.86[CHB][hapmap]
rs2070581	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs2163539	0.81[CHB][hapmap]
rs2303987	0.86[CHB][hapmap]
rs33990056	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3738846	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3813229	0.85[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs3813232	0.86[CHB][hapmap]
rs4852983	0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57394861	0.91[ASN][1000 genomes]
rs61091264	0.91[ASN][1000 genomes]
rs6546875	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6722659	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6737597	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7566009	0.81[ASN][1000 genomes]
rs7594485	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]
rs7606408	0.80[ASN][1000 genomes]
rs9309477	0.93[ASN][1000 genomes]
rs9808106	0.93[ASN][1000 genomes]
rs9808471	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6726010	STAMBP	cis	uninvolved skin	skin_eQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74057000-74093600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:74065000-74094400	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:74065600-74094400	Strong transcription	Dnd41	blood
4	chr2:74066400-74091600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:74066400-74094400	Strong transcription	Fetal Muscle Trunk	muscle
6	chr2:74066600-74094200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:74066600-74094400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr2:74066800-74094200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr2:74067000-74094200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:74068600-74094200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr2:74068800-74094400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr2:74068800-74094400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:74070600-74094200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:74070800-74093000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:74070800-74094200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr2:74070800-74094200	Strong transcription	Liver	Liver
17	chr2:74070800-74094400	Strong transcription	Placenta	Placenta
18	chr2:74070800-74094400	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr2:74071000-74094400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr2:74071200-74093800	Strong transcription	HepG2	liver
21	chr2:74071200-74094200	Strong transcription	Adipose Nuclei	Adipose
22	chr2:74071200-74094200	Strong transcription	Fetal Brain Female	brain
23	chr2:74071200-74094200	Strong transcription	Fetal Thymus	thymus
24	chr2:74071200-74094400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr2:74071400-74094000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr2:74071400-74094200	Strong transcription	Primary T cells from cord blood	blood
27	chr2:74071600-74094200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr2:74071600-74094200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:74071600-74094200	Strong transcription	Fetal Muscle Leg	muscle
30	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:74071600-74094200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:74071600-74094600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:74071800-74094200	Strong transcription	Thymus	Thymus
34	chr2:74071800-74094400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:74072200-74094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:74072200-74094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr2:74072200-74094400	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr2:74076000-74094200	Strong transcription	Primary B cells from cord blood	blood
39	chr2:74078200-74101000	Weak transcription	Small Intestine	intestine
40	chr2:74078600-74094400	Strong transcription	Fetal Intestine Large	intestine
41	chr2:74079600-74094200	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr2:74079800-74094200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr2:74079800-74094400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr2:74080800-74094200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:74084000-74094200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:74084000-74094600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr2:74084200-74094400	Strong transcription	Primary B cells from peripheral blood	blood
48	chr2:74085600-74094400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr2:74085800-74092000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:74085800-74092000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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