Variant report
| Variant | rs59343451 |
|---|---|
| Chromosome Location | chr2:74114023-74114024 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000163017 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10176602 | 0.82[ASN][1000 genomes] |
| rs12467259 | 0.95[ASN][1000 genomes] |
| rs13397133 | 0.83[ASN][1000 genomes] |
| rs17009417 | 0.83[ASN][1000 genomes] |
| rs17009421 | 0.82[ASN][1000 genomes] |
| rs17009424 | 0.81[ASN][1000 genomes] |
| rs17009429 | 0.83[ASN][1000 genomes] |
| rs17009430 | 0.83[ASN][1000 genomes] |
| rs17009433 | 0.83[ASN][1000 genomes] |
| rs17009436 | 0.83[ASN][1000 genomes] |
| rs2070581 | 0.95[ASN][1000 genomes] |
| rs2163539 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2303987 | 0.83[ASN][1000 genomes] |
| rs3813232 | 0.95[ASN][1000 genomes] |
| rs45575736 | 0.83[ASN][1000 genomes] |
| rs57950796 | 0.84[ASN][1000 genomes] |
| rs58819058 | 0.84[ASN][1000 genomes] |
| rs61308121 | 0.84[ASN][1000 genomes] |
| rs6752983 | 0.83[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs72814150 | 0.83[ASN][1000 genomes] |
| rs72814154 | 0.83[ASN][1000 genomes] |
| rs72814161 | 0.83[ASN][1000 genomes] |
| rs72814169 | 0.84[ASN][1000 genomes] |
| rs9679205 | 0.82[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:74097600-74114600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
