Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084407	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11676622	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11679233	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11690703	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11691106	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12615494	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12694001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13010387	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13413837	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13416642	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419430	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1374710	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1374711	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34130978	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62177725	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62177726	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6712212	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67404857	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71408989	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7597728	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205304000-205314200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:205306000-205306800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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