Variant report

Variant	rs67404857
Chromosome Location	chr2:205320942-205320943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084407	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10177202	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11676622	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11679233	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11690703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11691106	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12615494	0.88[EUR][1000 genomes]
rs12694001	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13010387	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13413837	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13416642	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13419430	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1374710	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1374711	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34130978	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62177725	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62177726	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6712212	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71408989	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7597728	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34706	chr2:205309211-205348724	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205319000-205321000	Weak transcription	Aorta	Aorta
2	chr2:205320000-205323200	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links