Variant report
| Variant | rs12694001 |
|---|---|
| Chromosome Location | chr2:205305894-205305895 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10084407 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10177202 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11676622 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11679233 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11690703 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11691106 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12615494 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs13010387 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13413837 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13416642 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13419430 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1374710 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1374711 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34130978 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62177725 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62177726 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6712212 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67404857 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs71408989 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7597728 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875721 | chr2:205232072-205306024 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv964353 | chr2:205303005-205473935 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:205304000-205314200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
