Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084407	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10177202	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11676622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11679233	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11690703	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11691106	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12615494	0.87[CEU][hapmap]
rs12694001	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13010387	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13413837	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13416642	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13419430	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1374710	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1374711	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34130978	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62177725	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62177726	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67404857	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71408989	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7597728	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6712212	SPATS2L	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205252800-205254200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:205253400-205253800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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