Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084407	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10177202	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11676622	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11679233	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11690703	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11691106	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12615494	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs12694001	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13010387	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13413837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13416642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419430	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1374711	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34130978	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62177725	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62177726	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6712212	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67404857	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71408989	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7597728	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205303800-205304200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:205304000-205314200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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