Variant report

Variant	rs10184424
Chromosome Location	chr2:58868909-58868910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10176567	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187702	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10207788	0.92[EUR][1000 genomes]
rs10211534	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13416859	0.87[EUR][1000 genomes]
rs13417036	0.94[EUR][1000 genomes]
rs17049705	0.92[EUR][1000 genomes]
rs2019102	0.87[AFR][1000 genomes]
rs62142335	0.82[EUR][1000 genomes]
rs6722165	0.94[EUR][1000 genomes]
rs6753110	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72961970	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58848000-58872000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:58859200-58875000	Weak transcription	Fetal Brain Male	brain
3	chr2:58862600-58870800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:58866200-58872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:58866400-58871800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:58866400-58872200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:58866400-58879000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:58867400-58872000	Weak transcription	K562	blood
9	chr2:58868400-58872000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:58868600-58871800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:58868600-58872000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:58868600-58872200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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