Variant report

Variant	rs6753110
Chromosome Location	chr2:58898151-58898152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10176567	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10184424	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10187702	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10207788	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10211534	0.93[EUR][1000 genomes]
rs13416859	0.86[EUR][1000 genomes]
rs13417036	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17049705	0.91[EUR][1000 genomes]
rs62142335	0.82[EUR][1000 genomes]
rs6722165	0.93[EUR][1000 genomes]
rs72961970	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58898000-58898400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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