Variant report

Variant	rs10207788
Chromosome Location	chr2:58935399-58935400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10176567	0.90[EUR][1000 genomes]
rs10184424	0.92[EUR][1000 genomes]
rs10187702	0.92[EUR][1000 genomes]
rs10196784	0.81[AFR][1000 genomes]
rs10211534	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618115	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13416859	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13417036	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17049705	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17049709	0.84[ASN][1000 genomes]
rs62142335	0.83[EUR][1000 genomes]
rs62142340	0.82[ASN][1000 genomes]
rs62142342	0.84[ASN][1000 genomes]
rs6722165	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6753110	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72961970	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58929400-58935600	Weak transcription	K562	blood
2	chr2:58932600-58935600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:58934800-58937200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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