Variant report

Variant	rs62142335
Chromosome Location	chr2:58916270-58916271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10176567	0.81[EUR][1000 genomes]
rs10184424	0.82[EUR][1000 genomes]
rs10187702	0.82[EUR][1000 genomes]
rs10207788	0.83[EUR][1000 genomes]
rs10211534	0.85[EUR][1000 genomes]
rs13417036	0.85[EUR][1000 genomes]
rs17049705	0.84[EUR][1000 genomes]
rs6722165	0.85[EUR][1000 genomes]
rs6753110	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58915000-58917400	Weak transcription	Right Atrium	heart
2	chr2:58915600-58916800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:58916200-58916400	Flanking Active TSS	K562	blood
4	chr2:58916200-58916600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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