Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205357799..205359653-chr2:205368261..205370276,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10166064	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10176503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202333	1.00[EUR][1000 genomes]
rs10205316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12468741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12472508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447487	1.00[EUR][1000 genomes]
rs1447491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470544	1.00[EUR][1000 genomes]
rs1545378	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1550910	1.00[AMR][1000 genomes]
rs1550911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1992844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2053762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2216958	1.00[EUR][1000 genomes]
rs4522588	1.00[AMR][1000 genomes]
rs55700498	1.00[EUR][1000 genomes]
rs56249032	1.00[EUR][1000 genomes]
rs6709185	1.00[EUR][1000 genomes]
rs7575807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921164	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205351800-205359800	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205356200-205359600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:205356600-205359200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:205356600-205359800	Weak transcription	Brain Substantia Nigra	brain
5	chr2:205356600-205366000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:205356800-205359400	Weak transcription	NHEK	skin
7	chr2:205357000-205359200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: