Variant report
| Variant | rs10176503 |
|---|---|
| Chromosome Location | chr2:205306024-205306025 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10166064 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10181861 | 1.00[GIH][hapmap] |
| rs10191204 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10202333 | 1.00[EUR][1000 genomes] |
| rs10205316 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12468741 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12472508 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1447487 | 1.00[EUR][1000 genomes] |
| rs1447491 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1447494 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470544 | 1.00[EUR][1000 genomes] |
| rs1545378 | 1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1550910 | 0.88[MKK][hapmap];0.83[AMR][1000 genomes] |
| rs1550911 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16824667 | 1.00[EUR][1000 genomes] |
| rs16836294 | 1.00[GIH][hapmap] |
| rs1992844 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2053762 | 1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2121681 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2121682 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2216958 | 1.00[EUR][1000 genomes] |
| rs4522588 | 0.83[AMR][1000 genomes] |
| rs55700498 | 1.00[EUR][1000 genomes] |
| rs56249032 | 1.00[EUR][1000 genomes] |
| rs6709185 | 1.00[EUR][1000 genomes] |
| rs6748537 | 1.00[GIH][hapmap] |
| rs7575807 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs921164 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875721 | chr2:205232072-205306024 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv964353 | chr2:205303005-205473935 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:205304000-205314200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr2:205306000-205306800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
