Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10166064	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10176503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10191204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202333	1.00[EUR][1000 genomes]
rs10205316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12468741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12472508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447487	1.00[EUR][1000 genomes]
rs1447491	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447494	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470544	1.00[EUR][1000 genomes]
rs1545378	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1550910	1.00[AMR][1000 genomes]
rs1550911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1992844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2053762	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2216958	1.00[EUR][1000 genomes]
rs4522588	1.00[AMR][1000 genomes]
rs55700498	1.00[EUR][1000 genomes]
rs56249032	1.00[EUR][1000 genomes]
rs6709185	1.00[EUR][1000 genomes]
rs7575807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921164	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2121681	TFEC	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205351800-205359800	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205352000-205356000	Weak transcription	Osteobl	bone
3	chr2:205352800-205356000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:205352800-205356000	Weak transcription	NHDF-Ad	bronchial
5	chr2:205353000-205356000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:205353000-205356200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:205353200-205356000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:205355200-205357000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:205355600-205356600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:205355600-205356800	Enhancers	NHEK	skin
11	chr2:205355800-205356200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:205355800-205356800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: