Variant report

Variant	rs10202333
Chromosome Location	chr2:205349134-205349135
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10166064	1.00[EUR][1000 genomes]
rs10176503	1.00[EUR][1000 genomes]
rs10191204	1.00[EUR][1000 genomes]
rs10205316	1.00[EUR][1000 genomes]
rs12468741	1.00[EUR][1000 genomes]
rs12472508	1.00[EUR][1000 genomes]
rs1447487	1.00[EUR][1000 genomes]
rs1447491	1.00[EUR][1000 genomes]
rs1447494	1.00[EUR][1000 genomes]
rs1470544	1.00[EUR][1000 genomes]
rs1545378	1.00[EUR][1000 genomes]
rs1550911	1.00[EUR][1000 genomes]
rs16824667	1.00[EUR][1000 genomes]
rs1992844	1.00[EUR][1000 genomes]
rs2053762	1.00[EUR][1000 genomes]
rs2121681	1.00[EUR][1000 genomes]
rs2121682	1.00[EUR][1000 genomes]
rs2216958	1.00[EUR][1000 genomes]
rs55700498	1.00[EUR][1000 genomes]
rs56249032	1.00[EUR][1000 genomes]
rs6709185	1.00[EUR][1000 genomes]
rs7575807	1.00[EUR][1000 genomes]
rs921164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1012465	chr2:205335630-205349444	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv10212	chr2:205343655-205349471	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3459945	chr2:205343733-205349272	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3459944	chr2:205343750-205349254	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3459946	chr2:205343750-205349254	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv963955	chr2:205347924-205351240	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205338200-205350400	Weak transcription	NHLF	lung
2	chr2:205341600-205351400	Weak transcription	Aorta	Aorta
3	chr2:205345800-205349800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:205348400-205349200	Enhancers	Gastric	stomach
5	chr2:205348400-205351800	Enhancers	Fetal Muscle Leg	muscle
6	chr2:205348400-205352600	Enhancers	Fetal Brain Male	brain
7	chr2:205348600-205349200	Enhancers	Fetal Heart	heart
8	chr2:205348800-205350200	Weak transcription	Fetal Brain Female	brain
9	chr2:205348800-205351600	Weak transcription	Fetal Intestine Small	intestine
10	chr2:205348800-205351600	Weak transcription	HSMMtube	muscle
11	chr2:205348800-205352400	Weak transcription	HepG2	liver
12	chr2:205349000-205350400	Weak transcription	NHEK	skin
13	chr2:205349000-205350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:205349000-205351400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:205349000-205351400	Weak transcription	Fetal Intestine Large	intestine
16	chr2:205349000-205351400	Weak transcription	Fetal Lung	lung
17	chr2:205349000-205351600	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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