Variant report

Variant	rs16824667
Chromosome Location	chr2:205145890-205145891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10166064	1.00[EUR][1000 genomes]
rs10176503	1.00[EUR][1000 genomes]
rs10202333	1.00[EUR][1000 genomes]
rs10205316	1.00[EUR][1000 genomes]
rs11891596	1.00[EUR][1000 genomes]
rs12468741	1.00[EUR][1000 genomes]
rs12472508	1.00[EUR][1000 genomes]
rs1447487	1.00[EUR][1000 genomes]
rs1447491	1.00[EUR][1000 genomes]
rs1447494	1.00[EUR][1000 genomes]
rs1470544	1.00[EUR][1000 genomes]
rs1545378	1.00[EUR][1000 genomes]
rs1550911	1.00[EUR][1000 genomes]
rs1992844	1.00[EUR][1000 genomes]
rs2053762	1.00[EUR][1000 genomes]
rs2121682	1.00[EUR][1000 genomes]
rs2216958	1.00[EUR][1000 genomes]
rs55700498	1.00[EUR][1000 genomes]
rs56249032	1.00[EUR][1000 genomes]
rs6709185	1.00[EUR][1000 genomes]
rs6751197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6751909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6752041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7575807	1.00[EUR][1000 genomes]
rs921164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005589	chr2:205143670-205204662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv536121	chr2:205143670-205204662	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205137200-205147000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:205138600-205146000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:205142400-205146200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:205142400-205146600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:205145000-205149000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:205145400-205146400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:205145400-205147200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:205145600-205146400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:205145600-205147400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:205145600-205148200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:205145800-205147200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:205145800-205147200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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