Variant report

Variant	rs921164
Chromosome Location	chr2:205334420-205334421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205317459..205320428-chr2:205333008..205336253,3	K562	blood:
2	chr2:205317299..205320276-chr2:205333008..205336367,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10166064	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10176503	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10191204	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202333	1.00[EUR][1000 genomes]
rs10205316	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12468741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12472508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447487	1.00[EUR][1000 genomes]
rs1447491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1447494	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470544	1.00[EUR][1000 genomes]
rs1545378	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1550910	1.00[AMR][1000 genomes]
rs1550911	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824667	1.00[EUR][1000 genomes]
rs1992844	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2053762	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121681	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121682	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2216958	1.00[EUR][1000 genomes]
rs4522588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55700498	1.00[EUR][1000 genomes]
rs56249032	1.00[EUR][1000 genomes]
rs6435240	0.83[AFR][1000 genomes]
rs6709185	1.00[EUR][1000 genomes]
rs7575807	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7594308	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34706	chr2:205309211-205348724	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205332600-205335000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:205332600-205335000	Enhancers	NHLF	lung
3	chr2:205332600-205335200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:205332600-205335600	Enhancers	NHDF-Ad	bronchial
5	chr2:205332600-205336200	Enhancers	Fetal Lung	lung
6	chr2:205333200-205334600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:205333200-205334600	Enhancers	HSMMtube	muscle
8	chr2:205333200-205334600	Enhancers	Osteobl	bone
9	chr2:205333400-205334600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr2:205333400-205335200	Enhancers	NHEK	skin
11	chr2:205333400-205335800	Enhancers	Adipose Nuclei	Adipose
12	chr2:205333600-205335600	Enhancers	Fetal Kidney	kidney
13	chr2:205333600-205336000	Enhancers	Brain Anterior Caudate	brain
14	chr2:205334200-205334600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:205334200-205334600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:205334200-205335200	Weak transcription	K562	blood
17	chr2:205334200-205337200	Weak transcription	NH-A	brain
18	chr2:205334400-205335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:205334400-205337000	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links